Index

A

area_density (src.roots.Roots attribute) area_per_tree (src.roots.Roots attribute)

AVOGADROS_CONSTANT (in module src.constants) axial_fluxes() (src.model.Model method) axial_permeability (src.tree.Tree attribute)

C

concentration (src.solute.Solute attribute)

conductivity() (src.roots.Roots method) cross_sectional_area() (src.tree.Tree method)

D

density (src.solute.Solute attribute)

depth() (src.soil.Soil method)

E

elastic_modulus (src.tree.Tree attribute) element_area() (src.tree.Tree method)

element_height (src.tree.Tree attribute) element_radius (src.tree.Tree attribute) element_volume_water() (src.tree.Tree method)

G

gas_properties_to_dict() (in module src.tools.iotools)

GRAVITATIONAL_ACCELERATION (in module src.constants) ground_water_potential (src.tree.Tree attribute)

H

height (src.tree.Tree attribute)

hydraulic_conductivity (src.soil.Soil attribute)

I

initialize_netcdf() (in module src.tools.iotools)

L

layer_depth() (src.roots.Roots method)

layer_thickness (src.soil.Soil attribute) layer_thickness() (src.roots.Roots method)

M

M_SUCROSE (in module src.constants) M_WATER (in module src.constants) main module MAX_ELEMENT_COLUMNS (in module src.constants) Model (class in src.model) model_variables (in module src) module main src.model src.roots src.soil src.solute src.tools.iotools src.tools.plotting src.tree

MOLAR_GAS_CONSTANT (in module src.constants) molar_mass (src.solute.Solute attribute)

N

name (src.solute.Solute attribute) ncf (src.model.Model attribute)

num_elements (src.soil.Soil attribute) (src.tree.Tree attribute)

P

photosynthesis_rate (src.tree.Tree attribute) plot_ax_up_change() (in module src.tools.plotting) plot_phloem_pressure_top_bottom() (in module src.tools.plotting) plot_simulation_results() (in module src.tools.plotting)

plot_variable_vs_time() (in module src.tools.plotting) plot_xylem_pressure_top_bottom() (in module src.tools.plotting) pressure (src.soil.Soil attribute) (src.tree.Tree attribute) properties_to_dict() (src.model.Model method)

R

radial_fluxes() (src.model.Model method) radial_hydraulic_conductivity (src.tree.Tree attribute) RHO_SUCROSE (in module src.constants) RHO_WATER (in module src.constants) root_area_index() (src.roots.Roots method)

root_conductance() (src.roots.Roots method) root_fluxes() (src.model.Model method) rooting_depth (src.roots.Roots attribute) Roots (class in src.roots) run() (src.model.Model method) run_scipy() (src.model.Model method)

S

Soil (class in src.soil) soil_conductance_scale (src.roots.Roots attribute) soil_elements() (src.roots.Roots method) soil_root_conductance() (src.roots.Roots method) Solute (class in src.solute) solutes (src.tree.Tree attribute) space_division (src.tree.Tree attribute) src.model module src.roots module src.soil module

src.solute module src.tools.iotools module src.tools.plotting module src.tree module sugar_concentration_as_numpy_array() (src.tree.Tree method) sugar_loading_rate (src.tree.Tree attribute) sugar_target_concentration (src.tree.Tree attribute) sugar_unloading_rate (src.tree.Tree attribute) sugar_unloading_slope (src.tree.Tree attribute)

T

transpiration_rate (src.tree.Tree attribute)

Tree (class in src.tree) tree (src.model.Model attribute)

U

update_sap_viscosity() (src.tree.Tree method)

update_sugar_concentration() (src.tree.Tree method)

V

viscosity (src.tree.Tree attribute)

VISCOSITY_WATER (in module src.constants)

W

write_netcdf() (in module src.tools.iotools)